Posts In Category Under Review

OBO Format

on January 22, 2010 by David Osumi-Sutherland in Under Review, Comments (0)

David Osumi-Sutherland FlyBase, University of Cambridge, Downing Street, Cambridge CB2, 3EH, UK Abstract OBO format is a popular ontology file format. It can express a subset of the description […]


Ontologies for Sharing, Ontologies for Use

on by David Shotton in Under Review, Comments (3)

David Shotton §, Chris Catton and Graham Klyne Image Bioinformatics Research Group, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK § Corresponding author: e-mail: […]


Resource Description Framework (RDF)

on by Simon Jupp in Under Review, Comments (3)

Introduction This post provide a brief overview of the Resource Description Framework (RDF). RDF is a W3C recommended standard for publishing data on the Web and is one of […]


Community Driven Ontology Development

on by Frank Gibson and James Malone in Under Review, Comments (4)

Frank Gibson and James Malone§ §European Bioinformatics Institute, Cambridge, CB5 8LW, UK Community driven ontology development is the process of collaboratively building an ontology which represent the understanding of […]


Reference and Application Ontologies

on by James Malone and Helen Parkinson in Under Review, Comments (6)

James Malone and Helen Parkinson European Bioinformatics Institute, Cambridge, CB10 1SD, UK Introduction An application ontology is an ontology engineered for a specific use or application focus and whose […]


OWL Syntaxes

on by Matthew Horridge in Under Review, Comments (5)

There are a variety of syntaxes for persisting, sharing and editing OWL ontologies. These syntaxes range from the officially recommended RDF/XML exchange syntax, that any OWL compliant tool must […]


Protégé & Protégé-OWL

on January 21, 2010 by Alan Rector in Under Review, Comments (5)

What is Protégé Protégé-OWL has become the default open-source editor for the Web ology Language, OWL (See also ).  It was developed collaboratively between University of Manchester and Stanford […]


Ontological Annotation of Data

on by Helen Parkinson in Under Review, Comments (3)

An introduction to annotation of data using ontologies with examples from the bio-medical domain.